Visualization Workflows

This page documents visualization workflows and functions in Mycelia.

Assembly Plots

Visualize assembly statistics and quality metrics.

Functions

Assembly statistics plots
Contig length distributions
Coverage plots

K-mer Plots

Visualize k-mer analysis results.

Functions

K-mer frequency spectra
Coverage histograms
Error detection plots

Phylogenetic Plots

Visualize phylogenetic relationships and trees.

Functions

Tree visualization
Bootstrap support display
Clade highlighting

See tutorials for practical examples of visualization
See API Reference for detailed function documentation