Assembly Validation Workflows

This page documents assembly validation workflows and functions in Mycelia.

Basic Statistics

Calculate fundamental assembly quality metrics.

Functions

N50, L50 calculation
Contig length distributions
Assembly size metrics

Quality Metrics

Comprehensive assembly quality assessment.

Functions

Completeness assessment
Correctness validation
Contiguity analysis

Validation Approaches

Multiple methods for validating assembly quality.

Functions

Reference-based validation
Reference-free metrics
k-mer based validation

See Tutorial 5: Assembly Validation for practical examples
See API Reference for detailed function documentation